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Cytokine concentrations were analyzed after performing log transformations to adjust the standard deviations.
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The prognostic value was calculated performing log-rank tests and multivariate Cox-Regression analysis.
The public release of CORAL will use the better performing log-odds function.
Gene-gene interactions were estimated using "SNPassoc" package [ 33] within R statistical software [ 34] performing log-likelihood ratio tests (LRTs).
We compared the time to first P. falciparum infection in the FM1 versus FM2 sample groups (irrespective of whether the infection caused symptoms) by generating Kaplan-Meier plots and performing log-rank analysis (Fig. 9).
A simple mechanism to obtain a scaled-up version of a scoring matrix is: (a) taking the antilog of the scoring matrix and g, where g is the gap costs, i.e. the equivalent log-odd of a gap matching probability; (b) multiplying these antilog values by β factor such that their minimum log-odd value should be greater than or equal to zero; (c) performing log-odd operation on these scaled-up values.
We performed log transformations to deal with non-normality of continuous variables.
We also performed log rank analysis of Kaplan-Meier curves for overall survival in defined prognostic subgroups.
We subsequently performed log transformation, quantile normalisation, and imputation of missing values using the k-nearest neighbourhood method (k = 10).
After data filtration, MADSCAN perform log transformation of the median intensities to makes the distribution of the data symmetrical and almost normal.
After the deployment and logging tasks are performed, logging instruments canister is carried back to the surface by the plunger and then data is transferred to the wellhead device near field wireless communication technology.
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