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The pair-wise matching is performed using a simplified version of the Hungarian algorithm [ 35] that minimises the sum of the distances between the paired leaves.
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DNA extraction from FPE broth was performed using a simplified protocol.
Post-test calculations were performed using a version of SCDAP/RELAP5/MOD3.2.
Yeast transformations were performed using an adapted version of the simplified lithium acetate transformation method [ 60].
We omitted the first 40% of the sampled trees for the calculation of the consensus tree shown in Additional file 6. Tree reconciliation was performed in Jane 4 [ 43], using a simplified version of our ML phylogeny as "parasite" and different hypotheses [ 41, 42] about phylum relationships as "host" tree.
The results represent challenges performed using an incremental version.
These values are normalized using a simplified version of the ATARiS algorithm53 resulting in knockdown values for 14,082 genes.
We also simulated data under a simple Wright Fisher model with migration (Appendix III2) using a simplified version of previously described algorithms [10], [13].
The UKCAT database records reported socioeconomic status using a simplified version of the socioeconomic classification system used by the National Office for Statistics.
All subjects were interviewed "face to face" by trained physicians using a Simplified version of Composite International Diagnostic Interview (CIDI) [ 8], hence the acronym CIDI "Simplified" (CIDIS) [ 9, 10].
We use a simplified version of the tagset used in the AnCora 3.0 corpus / DEFT Spanish Treebank.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com