Sentence examples for performed overlap from inspiring English sources

With the goal of evaluating the detection ability of IgC2N in comparison to other existing methods, we performed overlap analysis with the set of variants detected by IgC2N and the list of variants reported by McCarroll et al that implemented Birdsuite [19].

Using Gitools [ 29], we performed overlap analysis between the modules used.

We also performed overlap analyses on genes from pairwise comparisons of interest to evaluate the level of agreements across studies.

We performed overlap analysis between conserved genomic regions (as determined by BLSSpeller) and open chromatin regions (see Supplementary Methods 1.2).

NCBI's RefSeq pipeline has been considered reliable and relatively conservative, so we performed overlap analyses to determine how many of the RefSeq models were captured in the GLEAN consensus sets.

Further analyses were performed overlapping the H3.3 DiffBind peaks from ChIP-seq with DiffExp genes from RNA-seq.

For both training and validation process, we performed overlapping cropping to crop them to dimensions of 64 × 64 with a stride of 32 pixels, leading to a total amount of 132,000 elements for each positive set and negative set.   (2) Testing dataset.

Attempts to induce the phage from all 20 serotype 1b strains available in our collection were unsuccessful using conditions described by Mavris et al. We also performed overlapping PCR amplification to show that the genomic organization of this prophage region is similar among the serotype 1b strains.

Currently the following functions are implemented: gitools-convert to convert between file formats, gitools-enrichment to perform enrichment analysis, gitools-oncodrive to perform oncodrive analysis, gitools-correlation to perform correlations and gitools-overlaps to perform overlap analysis.

The recommended settings for Celera Assembler on 454 FLX Titanium chemistry are as follows: overlapper = mer (use a seed and extend overlap algorithm), unitigger = bog (use a best overlap graph approach for building unitigs), utgErrorRate = 0.03 (the error rate above which the unitigger discards overlaps), doOverlapTrimming = 1 (perform overlap based trimming) [ 40].

We demonstrate that these pathways perform overlapping but complementary subsets of the computations underlying the HRC.