Sentence examples for perform transcript from inspiring English sources

The filtered TopHat output was used with Cufflinks v1.3.0 to perform transcript assembly [ 49].

We have used 14 of the same samples to perform transcript expression analysis.

Although TRINITY has powerful transcript assembly capabilities for short and long read data the current version of the program cannot perform transcript quantification.

The ability to perform transcript profiling in this context will become increasingly more relevant in identifying clinically useful biomarkers in non-surgical therapies.

This enables RNA-Skim to perform transcript quantification on each cluster independently, reducing a complex optimization problem into smaller optimization tasks that can be run in parallel.

So the first task in using RNA-Seq to perform transcript level analysis should be to determine what part of these challenging regions represents true biology that is worth quantifying and what part of it is artifactual.

In the present study, we performed transcript profiling together with the analysis of primary metabolites to better understand the response to cold during light-dark cycles and in continuous light time series.

AYM performed transcript analysis.

CK conceived the study, performed transcript mapping and assembly and critically revised the manuscript.

We performed "transcript parts per million" (TPM) and "reads per kilobase per million" (RPKM) normalization for our samples.

We performed transcript assembly, abundance estimates and differential expression analysis with Cufflinks2 (version 2.1.1) and Cuffdiff 2 [ 22].