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A nonparametric method based on wavelet transformation was employed to perform significance tests for the predicted loci.
We did not perform significance tests on these deviations as we had no null expectations for their values.
Summary: A large number of websites and applications perform significance testing for gene categories/pathways in microarray data.
In general, the Y chromosome is too small, and carries too few yeast orthologues, to perform significance tests.
We used the parametric procedure in the software program Introgress to perform significance testing for departures from neutral expectations for genomic clines [ 38].
Both EDGE and ORIOGEN have the capability to perform significance analysis on time-course data, and both have options for identifying genes that show different expression over time between two biological conditions.
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We have performed significance t-tests for the differences of the means observed when using farthest-first, confidence and d-Confidence.
To discover differentially expressed genes in each cultivar, we performed significance analysis of microarrays for normalized data, and identified 490 genes preferentially expressed in japonica and 104 genes in indica.
After performing significance analysis of microarrays (SAM) on the data installed in MultiExperiment Viewer (MEV) (Saeed et al. 2006), we identified 699 probes with preferential expression in japonica and 118 probes with preferential expression in indica.
After pre-processing, significantly differentially-expressed genes were identified by performing significance analysis of microarray (SAM) [14].
Thus, performing significance testing with a non-parametric method was necessary.
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