Expression analysis was performed parsing the assembly.ace files using a Perl script.
The chimera analysis was performed parsing the results of the BlastX of the 5' and 3' extremes (300 nt) of each unigene using TAIR 8 as blast database.
HCUP provides a SAS program to parse the data set, but we chose to develop our own program to perform the parsing.
In [11], this model was extended to perform constituency parsing.
Luong et al. [24] employed a recursive model to learn vector representations for phrases and used them to perform syntactic parsing.
Plug-ins can, for example, call high-level methods from the API that perform file parsing, process monitoring, algorithm execution, and error-detection.
Key elements in UIMA are Text Analysis Engines (TAEs), which are the software modules that perform tagging, parsing, named entity recognition or other NLP tasks.
Further functional inference of amino acid sequences from plasmid-or genomic-island-encoded genes were performed by parsing for conserved domains in PFAM (pfam.janelia.org) and conserved motifs in PROSITE (ca.expasy.org/tools/scanprosite/).org/tools/scanprosite/
For example, Etzioni says, it would take a talented computer science graduate student weeks of extensive reading to gain an overview of techniques used in the last 5 years to perform dependent parsing (a task in natural language processing), the data sets produced, and the accuracy rates.
An application abstraction step is performed to parse the input application file and to extract the work loads from it.
