Sentence examples for perform alignments from inspiring English sources

TopHat incorporates the Bowtie v0.12.7 algorithm to perform alignments.

BLAT v34 software [ 57] was used to perform alignments of strain PB12, against JM101.

The second strategy, the default BicPAM option, is to iteratively perform alignments on each column (or row).

The blastall executable by default uses BLOSUM62 to perform alignments of amino acid sequences, and this is the matrix used in all stages before composition adjustment is performed.

However, the sequences used in this study correspond to coding sequences from which we extrapolated their most conserved parts (cores) to perform alignments.

We then perform alignments against the human genome 18 on trimmed and non-trimmed S1 and S2 data using SOAP2, Bowtie [ 15], BWA [ 13], and Novoalign (http://www.novocraft.com), respectively.

Others have begun to perform alignment techniques based on a refinement approach [6].

We then used transAlign [27] to perform alignment via back-translation.

Progressive Mauve uses Muscle or clustlW to perform alignment.

We are developing a version of PINALOG to perform alignment of PPINs from multiple species.

First, the query regions are grouped into chunks and the BAM index is loaded into memory to perform alignment retrieval.