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These variables were regressed against the maturation index, time to fusion and percentage of length gained.

Figure 15 shows that with respect to ISPRING, the maximum percentage of length difference is 69.3 %, whereas the value is 3.68 % as for ESUCR-DTW.

For example, there is a pattern of length 479, and ISPRING returns its best-so-far subsequence of length 186; the percentage of length difference in this case is 61.17 %.

The percentage of length measurements with a match fell 5 6% at all confidence levels, but the probability of a random match fell by a slightly greater amount at all confidence levels, indicating that removal of those clones essentially removed only accidental matches.

The normalized read depth coverage and the percentage of length coverage of each single-copy gene in each chromosome are provided in Additional file 2: Table S2.

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Open image in new window Fig. 15 The distribution of the percentages of length difference between the 100 patterns and the 100 corresponding best-so-far subsequences obtained by ISPRING and ESUCR-DTW.

The percentages of length of micropapillary pattern per maximal length of the invasive carcinoma ranged from 24% to 100% (median, 66).

Briefly, the index is a ratio expressed as percentage of arm length to leg length; an index over 100 indicates relatively long arms.

Disease severity was expressed as a percentage of lesion length (cm)/leaf length for individual plants (Tao et al. 2009).

For each of the 3 matches, the number of ambiguous bases (International Union of Pure and Applied Chemistry codes) and the percent aligned (alignment length as percentage of query length) were calculated.

The observed inversion length was expressed as a percentage of the length of 2R, estimated by dividing the interval length between breakpoints by the whole length of 2R (see below).

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