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Standard output formats have been made available including an HTML output generated with the Mview (19), a software that helps the visualization of the alignment in the browser by coloring identical sequences and showing the percentage identity between the sequences.
The percentage identity between the reference copy and ORF1 ranges between 96% and 99%, meaning that these copies have not diverged much.
SLiMFinder uses the largest GABLAM [8] ordered percentage identity between each pair of sequences to generate the distance matrix for MST calculations.
The percentage identity between the predicted amino acid sequences of B. pseudomallei OmpAs and immunogenic OmpAs from other bacteria was calculated using Jalview [32].
Calculation of the percentage identity between 7 I. ricinus anticomplement sequences indicated that they were more closely related at the nucleotide level than at the amino-acid level (Table 2).
Percentage identity between Nephtys's ORF and T. adhaerens was calculated using the amino acid sequence included in the analysis with the program WU-blastp (http://www.proweb.org/proweb/Tools/WU-blast.html).html
Similar(25)
However, the percentage identities between the different forms of HSP90 underline that both forms of the crustacean gene are closest in terms of sequence similarity with the vertebrate α form.
With the exception of Oant_0679, which encodes a hypothetical protein of unknown function, all other ORFs have orthologs in the B. abortus virB operon, with percentage identities between the homologous predicted proteins ranging from 22.9% to 45.5%.
Percentage identities between homologous genes were obtained by global alignments with ClustalW [ 60] using default parameters.
The percentage identities between ecotin and ISP1, ISP2 and ISP3 are 32%, 32%and30%0% respectively.
Percentage identities between homologous genes were obtained by alignment of the proteins from whole genomes using the tBLASTn program [ 64].
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