Exact(4)
The L. monocytogenes genomes are remarkably syntenic: genome size, G + C content, percentage coding and average length of protein-coding genes are similar among all four strains (which was previously reported for other listerial genomes) [ 14, 15].
The percentage coding agreement among raters was 95%, with 3 initial discrepancies occurring.
The percentage coding DNA in the genome is low, around 2 5% in humans for example.
To empirically determine the optimum percentage coding length to retrieve allelic variants without spurious hits, we used the following parameters: 70% nucleotide sequence identity over 1) 10%, 2) 50%, and 3) 70% of the coding sequence (CDS) length.
Similar(56)
The number of births coded with GA value = 0, i.e. 40 weeks and above, was nearly 90%, which exceed the percentage coded as 40 weeks and above in the following years by almost 20%.
This density trade-off was dictated by the percentage of coding and non-coding regions along with the total feature number available.
However, we also observed multiple windows with both a low percentage of coding sequence and low diversity and a high percentage of coding sequence and high diversity.
Despite its reduced size, this genome has a relatively low percentage of coding DNA (67.4%), which is much less than the coding density of Buchnera in aphids (83%).
An important observation from the results therein, is that in practice, the sizes of the largest cliques is small, rendering the computational problem relatively easy while still allowing for a high percentage of coding gain over the uncoded scheme.
Here, the percentage of coding DNA ranged from 73.54 to 95.54%.
The GC% content and the percentage of coding sequences were not significantly different between the two groups (p = 0.57 and p = 0.15 respectively), even though these percentages were often smaller in the "bad bugs".
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