Across the chromosome, six genomic features (DNA transposons, LINE, LTR, low complexity (poly-purine/poly-pyrimidine stretches) and simple repetitive elements, GC content) were found to have significant correlations in four or more of the nine window sizes (200 kb to 1000 kb, 100 kb increment per window size) (Tables S3 and S4).
For an image size of (W, H), i.e., image width W and image height H, and frame rate f images per second, the number of cost functions to be computed per second for a window size (w, h) and disparity range dmax is ops = W H f w h d max.
Moreover, the window update mechanism of FeW cannot make full use of its accurate predicted window for transmission, because, in practice, this leads to a scheme with a non-integer increment in the window size per RTT.
According to the background distribution, it was assumed that each TSS distributed randomly over the genome, and its probability was defined as the window size per genome size.
Tag densities on the average profiles were determined by calculating tag density over each base pair (using a 40 bp window size) per 10 million total mapped reads.
At low pH, the MPL peaks at three and six filaments per fibril are obtained irrespective of window size; they are readily explained by intertwined three-filament fibrils, and this explanation is supported by TEM results of Figure 5.
To further investigate the relation between estimated haplotype variance and limitIBD and window size, we calculated per analysis the variance of the posterior total estimated breeding values (including polygenic effects) of the 2100 animals in the data, assuming no relations between animals.
Read counts per nucleotide were calculated and median smoothed using a window size of 10 bp, and smoothed read counts were extracted at intervals of 10 bp across the genome.
A previous analysis of the number of events per day in Iraq also used a half year temporal window size [2].
In Chimaera the 'variable sites per window' was set to 60; and in SiScan the window size was set to 150 with a step size of 40.
(ii) The program Phi [32]; http://www.mcb.mcgill.ca/trevor) was used to assess the significance of the pairwise homoplasy index (Φw) with a window size of 100 bases and 10,000 permutations per test.
