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More beneficial substitutions per positions were obtained at surface-exposed positions than at buried positions (DMSO: 275 vs 96; DOx: 138 vs 21; TFE: 152 vs 29).
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The resulting mean of the Monte Carlo iterations is quite stable across the genome, as is the per position 0.995 quantile.
TASR outputs target-derived contigs in fasta format, read positions and base coverage in text files and per-position information in a modified pileup format [6].
These include gross overrepresentation of some poly-base sequences, per-position biases towards some bases, and apparent preferences for some starting positions over others.
Per-position values for each parameter were then extracted for comparison according to secondary structure.
The per-position error frequencies are maximum likelihood estimates obtained from the alignments of the color-space reads.
Note that a comparison of BP with Gibbs sampling did not show significant differences in per-position performance.
Our method is also limited to per-position analysis and therefore it cannot directly account for compensatory mutations.
The resulting mixtures were analyzed in a 5800 MALDI TOFTOF (ABSciex) in the positive reflectron mode (3000 shots per position).
The higher the average positional entropy is, the higher the variability per position in the alignment is (see e.g. [ 30]).
On defense, he wants to limit his opponents to 12 points per position.
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