Sentence examples for per alignment of from inspiring English sources

These methods use different heuristic algorithms for maximizing the alignment, return a score per alignment of two proteins, and the statistical significance of the pairing [10], [11].

In the case where 2 models have the same number of free parameters, 0.3 AIC per site is equivalent to ~45 log likelihood points per alignment of 300 sites.

LR ¯ – the per alignment mean likelihood ratio of a nuGTR + Param against the corresponding nuGTR; % ¯ (SE) – the per alignment mean (and standard error) relative importance of a parameter, expressed as a percentage of the diGTR LR; Rank ¯ (SE) – the per alignment mean (and standard error) rank of the LR.

Furthermore, we evaluate the influence of sequence number per alignment on program performance.

Moreover, in order to speed-up computations, some methods restrict the type or the number of errors per alignment to a few mismatch and indel errors.

Therefore, there were up to 39 breaks in the simulated alignments, although the actual number of simulated breaks was much smaller due to the average of eight transfer events per alignment and some of those only modified branch lengths.

Three sets of similar topologies were generated per alignment and consisted of the maximum-likelihood phylogenetic tree inferred using PhyML [66] and 5 additional permutations by one or two random nearest neighbor interchanges (NNIs) or a random subtree prune and regraft (SPR) respectively.

The observed value of zero stop codons per alignment had a frequency of 0.007 in the parametric simulations under no selection for ORF maintenance.

Analysis of matched proteins-to-transcripts, relative to the total observed KSHV proteins per sample, shows alignment of 50% for latent BC-1, 88% for lytic BC-1, and 95% for latent BCBL-1.

Here we extend the previous reference alignment sets significantly in terms of the number and diversity of alignments and the number of sequences per alignment.

The major recording method for alignments is the SAM format, a record-per-alignment format whose file size increases with the number of reads that have been used in the alignment.