Sentence examples for pedigree package from inspiring English sources

We used the gblup function in the pedigree package [ 28] of R [ 26] to calculate these MEBV, using the simulated heritability of 0.25.

We used the blup function of the pedigree package in R [ 28] to calculate the EBV, with the simulated level of heritability of 0.25.

Previous versions of the BOADICEA model have used the MENDEL pedigree analysis software package (Lange et al, 1988) to calculate likelihoods on pedigrees.

The pedigree-based relationship matrix was obtained with the R package pedigree and the mean pedigree-based relatedness between each application family and the training population was calculated.

Wright's inbreeding coefficient (F) was calculated for mothers and offspring from the pedigree using the software package PEDIGREE VIEWER version 6.4 http://www-personal.une.edu.au/~bkinghor/pedigree.htm[ 81, 82].

The matrix A-1 was calculated using function makeAinv of the R-package pedigree.

The degree of consanguinity, indicating the degree to which parents of each participant are related to each other through their ancestors, was estimated using the Fortran software Package for Pedigree Analysis (PEDIG),[37] based on the pedigree of the total population.

Similarly, the user can draw the pedigree using the Kinship package [ 21] implemented in the R environment [ 22].

We also made extensive use of open-source technologies including the Linux operating system, Apache Web server, MySQL database, Perl interpreter, gfortran compiler, R statistical computing package, Kinship pedigree drawing package, ImageMagick image processing package, html2ps document converter, Concurrent Versions System version control package and Xemacs programming editor.

Summary: We present a software package for pedigree reconstruction in natural populations using co-dominant genomic markers such as microsatellites and single nucleotide polymorphisms (SNPs).

The statistical analyses for longitudinal data were performed with the R package Pedigreemm (pedigree-based mixed-effect models) (32) (see Supplementary Materials for details).