Sentence examples for pdb it from inspiring English sources
As no exact protein data bank (PDB) structure was available for dnaE in PDB, it was subjected to BLAST search against PDB structures using 0.001 e-value cut off.
Similarly to the PDB, it includes validation checking procedures to ensure good practice and the integrity of the deposited data.
Packet Delay Budget (PDB): it defines the upper limit of the delay suffered by a packet between the UE and the Policy and Charging Enforcement Function (PCEF).
When there are several structures in the PDB it is often possible to choose the one performing better, but if only one structure is available, structural minimization with molecular mechanics sometimes may improve the quality of the Rd.HMM.
Examining the bound chain structures in PDB database, it is observed that ligands do not always have a stable binding with protein chains at binding site, such as PDB ID: 2j22, CHAIN ID: A (Fig. 5).
The central stalk also contains an additional density at its distal end corresponding to an extended conformation of subunit F. When fit with available X-ray coordinates (PDB 2D00) it was confirmed that subunit F extends contralaterally to interact with a single A subunit thus bridging the distal end of the central stalk to the base of the A3B3 complex (Figure 2D).
Structure of EWS-FLI1 is not available in the PDB and it is an intrinsically disordered Protein (IDP).
Genetic factors are recognised to play a role in PDB and it is now possible to carry out genetic tests for research.
As sample queries for DB_331_CDD, they provided DB_8920_PDB [which Kann et al. (2007) named 'DB_10185', for the 10 185 PDB sequences it contained before additional filtering].
In fact, previous research indicates that many bond conformations and side-chain rotamers are likely incorrect in PDB, and it is useful to have an automated mechanism to fix these problems [ 33, 34].
Furthermore, if someone likes to perform molecular dynamics simulation or other computational analysis of a given PDB file, it may require preprocessing the file to add coordinates of missing atoms.
