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Concurrent with the above-mentioned biphasic patterns, the expression of NADPH oxidase gene was rapidly induced, peaking at 3 hai, while the expression of SAMDC and PAO was more slowly induced, peaking at 12 hai (Figures 5R, 5S and 5T).
For a global view of expression patterns, the expression level of unigenes was visualized in a three-dimensional space (Additional file 10: Figure S6).
For the analyses of the tissue-specific expression patterns, the expression in the root was arbitrarily chosen as the calibrator for each gene.
For a global view of expression patterns, the expression level of 3,152 UniGenes which changed less than 32 fold (2), was visualized in 3 dimensional space.
This is supported by the uniform overall transcription level in most tissues, the heterogeneity in its patterns, the expression level proportion similarity in OR intact and disrupted genes and the total lack of correlation between human and mouse orthologous ORs.
To determine whether the expression patterns determined by RNA sequencing correspond to the RNA in situ hybridization patterns, the expression data for those genes were examined in the midgut transcriptome.
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Despite having retained functional paralogs of several pigmentation pattern genes, the expression patterns of the paralogs seem redundant.
The results also showed that the tissue expression patterns or the expression levels of the precursor and mature forms differed.
Both the diurnal patterns and the expression levels of the PPARs differed between WKY and SHR.
Similarly, the Meg3, Plagl1 and Peg3 brain allelic expression patterns also resemble the expression patterns of the fetus as a whole (Fig. 6D and not shown).
However, it remains unknown why a specific Aurora-A expression pattern, the perimembrane expression, is correlated with higher proliferative activity.
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