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For this period, we sequenced all isolates with the outbreak associated PFGE pattern JEGX01.0004 and NYS-MLVA pattern W (JEGX01.0004/NYS-W) (n = 28), selected isolates with the most common pattern JEGX01.0004/NYS-B (n = 6), and 1 isolate with pattern JEGX01.0004/NYS-AE, which was initially believed to be part of the outbreak.
The present paper focuses on repetitions in two dimensions that manifest themselves in form of two "tandem" occurrences of a same primitive rectangular pattern W where the two replicas touch each other with either one side or corner.
Given a pattern w and a text t, the speed of a pattern matching algorithm over t with regard to w, is the ratio of the length of t to the number of text accesses performed to search w into t.
where n w i denotes the occurrence count of pattern w i that occurs in the corpus.
where the Λ is the average amplitude of backscattering envelope σ{n·PRI} and azimuth beam pattern w a {n·PRI}.
Knowing R 0i, η 0i, and V ri, compressed range envelope p r, azimuth beam pattern w a, and the phase information related to instantaneous slant range R i are calculated.
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Furthermore, fractal mapping of geochemical patterns (W and Sn element) is undertaken to reveal the spatial association between local fractal dimension and mineralization.
For all i ∈ {1,…,4}, divide word-pattern w i into 25 sub-patterns of size 5 × 5.
The output is similar: H contains basis "gain-loss" patterns W contains the weights associated with each pattern at each locus.
We model the travel diffusion process to match the patterns w kk ', assuming that travelers are randomly chosen in the population with the per capita diffusion rate d kk ' = w kk '/ N k where N k is a variable indicating the population size [ 28].
The second phase of the WildSpan aims to grow long patterns (W-patterns) that are composed of two or more blocks spanning large wildcard regions in protein sequences.
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