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Pattern, position and width of the diffraction lines are used to derive the phases, the mechanical stress and grain size of the growing films.
Two base IOIs were used in order to further assess possible effects of pattern position on the salience of the perceived pulse.
To quantify this issue, the 351 switches that occurred across all 76 trials were sorted in 16 bins according to their pattern position; one bin for each 48 adjacent positions of the total 768.
The mean switch IOIs were not affected by base IOI, neither for decreasing (t = 1.19, df = 295, p = .55) nor increasing intervals (t = 1.44, df = 145, p = .59), which indicates that perceived rate was unaffected by pattern position per se.
(Note that the residue set defined at each pattern position corresponds to either a single amino acid residue or a small set of biochemically-related amino acid residues).
For each pattern position, we used Bayes theorem to calculate the raw probability for a helix helix interaction, given the 289 coupling strengths.
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The optimal positioning of the locators is designed by minimising the deviation in holes pattern positioning during drilling due to locators inaccuracy.
This means that the same IOIs occurred at pattern positions separated by 30 percent of the pattern length across patterns with different base IOI.
NKL genes show the NKL pattern (positions 41 45) or a NKL derived pattern.
This measure corresponds to the contribution (in nats) of individual pattern positions to the underlying statistical model's posterior log-likelihood ratio.
The determination of most distinguishing sequence patterns requires Markov chain Monte Carlo (MCMC) sampling because, a priori, we know neither those sequences assigned to each subgroup, nor the pattern positions for that subgroup, nor the conserved residues defining each pattern.
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