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Motivated by the finding that diet affected the correlation pattern of pairs of metabolites, we then looked at metabolome-wide effects of diet on network structure, using differential coexpression 'DiffCoEx' analysis.
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In line with recent results in yeast [ 18], we observed that interacting loci could jointly regulate the co-expression patterns of pairs of genes.
To determine whether responses across the population were indeed more varied in the daylight condition, we computed the correlation between mean firing response patterns of pairs of units from each animal ("signal correlation").
Effect propagation deals with the effect of specific viral proteins along the HHPIN and Similarity analysis focuses on the comparing the patterns of propagation of pairs of viral proteins.
Among the patterns considered, those consisting of pairs of solid words that co-occur within a prescribed maximum distance -or gapped factors- emerge in a variety of contexts of DNA and protein sequence analysis.
The LUT information contains a set of pairs of binary pattern and its corresponding estimated gray value.
The LD pattern was described as the proportion of pairs of SNPs with the r2 greater or less than the specified threshold.
It incorporates terms representing positive and negative correlation of pairs of training patterns with respect to class labels.
This generated more than 66 million of pairs of 3D patterns, which were compared in 5 minutes and 20 seconds.
This is done in an all-against-all procedure, and finally generates a list of pairs of 3D patterns, shown as interactive data tables and a Jmol viewer.
Links between genes indicate that the genes are co-expressed in at least one tissue during the final stages of embryonic development, and the weights attached to the links refer to the similarity of expression patterns for pairs of genes, calculated using the Jaccard coefficient (based on the numbers of shared tissues).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com