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You have all of these data, so it would be great to analyze the spatial pattern of docking recovery.
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Corresponding patterns of docking defects were observed in mouse Munc13 and RIM knockouts (Siksou et al., 2009; Han et al., 2011).
Second, they compare the spatial pattern of SV docking before and after stimulation.
Thus, MS-based proteomics represents an ideal method to quantify the complex spatio-temporal phosphorylation patterns of large docking proteins.
Enrichment of docking site pattern hits on ERK1/2 substrates was calculated with a one-tailed Fisher's exact test, using phosphorylated dbPTM substrates as a background set.
Figure 3 Illustration of docking settings.
The allele-specific patterns and the combined use of Docking and Energy Minimization (D1-EM-D2) are presented here as a tool to construct new pMHC complexes, which can be further analyzed using several available programs.
As can be observed in Figure 10, wFReDoW, as well as creating new RFFR models, also speeds up the docking experiments for all cases due to the reduction of docking experiments provided by the P-SaMI data pattern and the simultaneous docking execution performed by the virtual HPC environment.
Molecular docking indicated differential resistance pattern of blaTEM variants.
The root mean square deviation range was 0.0154 0.9753, with all values less than 2 Å, indicating that Surflex-Dock was reliable in causing reappearance of the binding pattern of the ligand, and the parameter setting for molecular docking was appropriate.
The number of docking sites affects the drug docking speed.
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