represents the Euclidean Distance after pattern matching using DTW.
However, we also use two other options using the existing pattern matching with Equation 1 and ME&MC, i.e., using the immediate previous frame (existing pattern matching) and using the McFIS (pattern matching using McFIS) to maximize the rate-distortion performance where an MR is not well matched with the best pattern.
(1) The existing pattern matching [12], i.e., matching and ME&MC being carried out using immediate previous frame, (2) pattern matching and ME&MC being carried out using the McFIS, and (3) pattern matching using the McFIS but ME&MC being carried out with the immediate previous frame.
Motifs were identified in these regions by exact pattern matching using custom PERL scripts.
Next, the program performs pattern matching using regular expressions that look for patterns with various context keywords to find more named entities.
As a result, the algorithm relies entirely on pattern matching using a list of generic names to de-identify names of relatives and proxies.
An overlap graph was constructed by an initial pairwise comparison of all molecules >150 kb, by pattern matching using commercial software from BioNano Genomics.
One question that relates to the generality of the approach described in this article is how much the algorithm's power in de-identifying names and locations relies on dictionary-based look-up with known PHI, versus pattern matching using PHI indicators and look-ups using generic dictionaries.
As the prediction tools for determining TFBs are not as complete in S. pneumoniae, we used the TFB prediction tool of E. coli to predict TFBs on the extracted promoter regions for each gene by pattern matching using the BPROM tool at the SoftBerry portal (http://linux1.softberry.com/berry.phtml) [ 54].
Second, the algorithm performs pattern matching using regular expressions that look for patterns with various context keywords, known as name or location indicators, to find more named entities.
