Sentence examples for pathways were visualized from inspiring English sources
Pathways were visualized with Matlab software.
The interrelations of molecular pathways were visualized by measuring the similarity among annotated gene functions by gene sharing.
Selected significantly enriched pathways were visualized using Pathview [ 23].
Finally, pathways were visualized in Cytoscape via the outputNetworkCytoscape function of the Cobra toolbox in MATLAB.
The most important signaling pathways were visualized via micro-array technique of regulated genes.
The pathways were visualized by pathview 49 with color-coded DEGs to represent how they are upregulated in different samples.
Pathways are visualized and they are annotated with differentially expressed genes.
The distributions of expected target coverage for three signaling pathways are visualized in Figure 1c.
On Figure 6b, the transcriptional regulation of the two pathways is visualized.
All pathways are visualized using KEGGtranslator (Wrzodek et al., 2011), and InCroMAP extends these pathways by visualizing expression data from each single platform therein.
The standardized fold changes for individual genes in KEGG pathways are visualized by using KEGGanim web tool [ 56] in Figure 3 and Additional file 2, 3, 4, 5.
