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Rice genes were matched to Arabidopsis as described above and related pathways were retrieved from aracyc_dump_20051021 (http://www.Arabidopsis.org/biocyc).org/biocyc
Only 3 pathways were retrieved.
KEGG pathways were retrieved for all slide genes [ 16- 18].
For pathway entities, genes contained in pathways were retrieved from the ConsensusPathDB database, 2013 edition [ 37].
KEGG pathways were retrieved from the KEGG web server (http://www.genome.jp/kegg/) [ 44].
All GO pathways were retrieved using the R software and Bioconductor.
Similar(41)
The classification of reactions into pathways was retrieved from the KEGG database.
The complete list of human pathways was retrieved from the KEGG Pathway Database (http://www.genome.jp/kegg/).jp/kegg/
Complementary information on gene pathways and on interactions between pathways was retrieved using the Kyoto Encyclopedia of Genes and Genomes (KEGG) [ 19].
The gene membership information of S. mutans UA159 corresponding to 84 different pathways was retrieved from the KEGG database (version 2011).
Functional annotation of biological pathways was retrieved from the ConsensusPathDB [ 40], a meta-database that summarizes the content of 22 human interaction databases.
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