Sentence examples for pathways were downloaded from inspiring English sources

KEGG metabolic pathways were downloaded from the KEGG website and converted into SBML files with the KEGG2SBML software package [58].

Gene pathways were downloaded from KEGG (http://www.genome.jp/kegg/).jp/kegg/

BioPAX (BioPAX working group, 2004) level 2 formatted pathways were downloaded on September 15 , 2009

The integrated pathways were downloaded in XML format and imported into Cytoscape [ 48].

A total of 269 human pathways were downloaded from KEGG [ 38] on Jun.

The complete KEGG reference pathways were downloaded as XML files [ 36] from http://www.genome.jp/kegg/xml/KGML_v0.7.1in December 2010.

A list of 117 pathways was downloaded from WikiPathways (http://www.wikipathways.org, [125]).

Connectivity between pathways was downloaded from KEGG (Aug. 16, 2007).

All of them except KEGG pathways are downloaded from MSigDB.

This is an ontology based database built using functional classification schemes such as Gene Ontology (GO, Enzyme Commissionnumbersrs (EC), BioCarta Pathways, and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways was downloaded from the USDA-ARS website [ 38] and the sequence similarity search was carried out using the default blast parameters and a cut off E value of 10-4.

Fungal proteins annotated as being part of the OXPHOS pathway were downloaded from the KEGG database (map 00190) [ 31].