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Consequently, disease pathways were discarded (except the KEGG pathway 'Asthma').
Striatum as an exclusion mask : In this analysis, all pathways were discarded if they enter the striatum.
Therefore, we calculated the number of damaged compounds and reactions for a network in which all alternative pathways were discarded yielding NDRD (number of damaged reactions without deviations) and NDCD (number of damaged compounds without deviations).
In recent studies on trout macrophages, peptidoglycan (PGN-B4) was identified as a major pro-inflammatory component of crude LPS preparations in which TLR4 and canonical TLR2 signalling pathways were discarded as potential recognition systems for peptidoglycans [ 9].
Similar(56)
Candidates that are not included in the pathways are discarded.
For example, if in a candidate related pathway pair, one pathway name has one partner of an "error-prone words pair"(EGFR1) and the other pathway name contains the other partner in the "error-prone words pair"(VEGF), this pair of candidate related pathways is discarded by our program.
Pathways without any connected reaction were discarded.
Modules that did not contain any genes annotated in the KEGG pathways that passed the filtering were discarded.
Pathways with <15 or >500 genes were discarded and the resulted dataset comprised 8806 genes and 2360 pathways to analyze.
Pathways with < 3 known chicken genes were discarded.
Small pathways with < 3 known chicken genes were discarded.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com