This led to the conclusion that we had the route to three evolutionary pathways plotted on our confocal microscope and preserved for further analysis or manipulation in the form of.tiff files [2].
You're left astonished at the devotion of the readers who will follow King down his labyrinthine pathways of plot, through the thickets of ALL CAPS paragraphs, only to emerge from a story within a flashback.
To understand the extent of mobility between classes over time, pathways were plotted for each class.
Although not as striking, a similar relationship could be observed when the first-order rate constants (Vmax/ K m) for the two pathways were plotted against each other.
To generate KEGG pathway diagrams, human pathway information was downloaded from the KEGG database and was imported into Mathematica 9.0 (Wolfram Research), where pathways were plotted and colored according to the designation in Figures S3 A and S3B.
Pathway enrichment p-values for GO Terms (Biological Processes) or Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways were plotted as heat-maps using the HeatmapViewer module of GenePattern.
However, a close approximation to protein abundance in the Linear Mixed Effects model is the population effect value, which give a measure of relative change (log scale) of abundance for each protein compared to all the populations (see Methods); the average population effect values for each Drosophila KEGG [25] pathway is plotted in Fig. 5a,b.
Accordingly, the Vmax values for each pathway were plotted against each other for each individual sample.
After POI vector length calculation, the imported coordinate matrix and the measured pathway are plotted in the GUI.
Remaining genes with higher methylation in patients were subjected to a GO analysis with two unranked lists of genes using GORILLA [ 32] (Additional file 8) and methylation values for significantly altered genes that map to the T-cell receptor signaling pathway were plotted in Fig. 3.
