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Selected pathways from this analysis are listed in (Table 1).

There were only four significantly enriched KEGG pathways from this set of genes as shown in Table 3. Genes for the "Neuroactive ligand-receptor interaction" pathway group were enriched with the lowest p-value for this class of genes.

The pathways from this analysis are included in additional files 4, 5 and 6.

The predicted pathways from this approach have the potential to redefine the role of AMPK as a survival master switch responding to stress imposed on the cell.

Use of the Broad Molecular Signatures Database to identify top canonical pathways from this gene set further revealed ECM-receptor interactions, β1-integrin interactions, focal adhesion, ECM organization and collagen formation as the top canonical pathways.

While several duplicated genes could be mapped to central metabolic pathways from the KEGG database, this was not possible for horizontally transferred genes (Additional file 16 Figure S 6 and Additional file 17: Figure S 7).

P38 MAPK signaling was identified as the most significant upregulated pathway from this analysis; ERK/MAPK signaling was the second.

Transcriptome data were linked to known transcription factor gene networks, and the transcription factor ATF4 (activating transcription factor 4) signaling network emerged as the only significant pathway from this analysis.

If confirmed, the possible absence of this gene lineage from Chloridoid genomes could have prevented the evolution of the C4 NADP-ME subtype in this C4 grass subfamily, largely explaining the absence of this biochemical pathway from this speciose C4 lineage.

If it is assumed that formic acid can be formed by end group reactions of solubilised hemicellulose then this will result in a split in the k2 pathway from this point, which may be introduced into the scheme by inclusion of an additional parallel first order reaction with a rate constant kfa, as shown in Figure  3.

Studying the pathways from the whiskers, scientists learn more about our sense of touch.