Overall, our functional analysis of the CNM, using Gene Ontology terms, MetaCore canonical pathways, and ChIP-Seq transcription factor prediction analysis, confirmed established findings and revealed additional novel insights.
The typical tasks include analysis of RNA-seq data (QC, preprocessing, alignment, quantitation, differential expression analysis, filtering and pathway analysis), ChIP-seq data (QC, preprocessing, alignment, peak calling, filtering, motif discovery and pathway analysis) and exome/genome-seq data (QC, preprocessing, alignment, variant calling and filtering).
Fig. 6 Comparison of the two scenarios "income first" and "ecological benefits" regarding their main characteristics and under consideration of the two alternative production pathways "fresh fresh wood chip production" and "dry drying with waste heat".
To catch the economic perspective of the "income first" scenario, annuities of the selected crop rotations ("The reference cropping systems comparing a poplar SRC with selected crop rotations" section) and two SRC wood chip production pathways were calculated (see "Wood chip production pathways" and "Yield and yield increase" sections).
SRC annuities were calculated for two production pathways: (a) fresh wood chip production and sale within a 20-km radius with a price of 93€ t od −1, reflecting the lower price paid for fresh material delivery [98] and (b) dried wood chip production and sale within a 20-km radius with a price of 116€ t od −1 (2006–2015 average).
Concerning the wood chip production pathways, it turned out that drying with waste heat from biogas plants (Fig. 7c) was economically beneficial for 1442 ha or 81% of the area addressed by the "income first" scenario, respectively, on 84% or 775 ha of the "ecological benefits" scenario.
Whether a proteasomal or autophagic degradation pathway is initiated by CHIP is significantly influenced by additional co-chaperones that bind to the chaperone-CHIP complex (Figure 1).
Chip manufacturers need a cleaning substance that can remove dirt and grime from the microscopic electronic pathways printed into the chips, without introducing new residue.
Note that the corresponding area for the fresh wood chip production pathway in the "ecological benefits" scenario is only 668 ha and for the dried wood chips pathway in the "income first" scenario restricted to 1711 ha.
Here, the positive effect was most pronounced in comparison to the "MWMW", and the "ORWW" crop rotations for the fresh wood chip production pathway.
Moreover, in case of the fresh wood chip production pathway and compared to all three crop rotations, the annuity difference even slightly inclined.
