Exact(4)
Enzymes of galactose-glucose interconversion pathway were extracted from KEGG galactose metabolism pathway.
Recommendations concerning asthmatic children's care pathway were extracted from the GINA-guidelines and the British and Canadian national guidelines for paediatric asthma [ 8- 10].
Nucleotide sequences of metabolic genes of interest (i.e., phospholipid pathway) were extracted from Bartonella genomes as well as genomes of selected organisms that represent the putative donor group and its sister groups.
Numbers of normalized reads/library for each pathway were extracted from the local database; non-biologically meaningful pathways (e.g. human disease or other organism-specific pathways) were removed, and the data filtered for minimum KEGG terms/pathway (threshold ≥ 5) and total reads/pathway (≥ 200).
Similar(56)
The information about the topology of each pathway was extracted from the corresponding KEGG's XML files.
For example, the galactose-glucose interconversion pathway was extracted from the galactose metabolism pathway to focus on genes directly involved in the galactose and glucose interconversion process.
Metabolic pathways were extracted from four databases as each database may contain false positive pathway predictions.
Sub-networks of enriched canonical pathways were extracted from each of the three progressive stages of the HNSCC transcriptome for independent topological analyses (Fig. 3a i).
Additional small molecule pathways were extracted from Small Molecule Pathways Database (SMPDB).
Components from the different metabolic pathways were extracted from KAAS annotation results.
As a result, annotated biological pathways were extracted from the KEGG database for inclusion in further analysis.
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