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We used Ingenuity Pathway software to identify cancer-related genes.
Enriched targets were then annotated with the PANTHER pathway software (Additional file 2: Figure S4).
HSCORE of antigens showing significantly relationships in breast cancer were imported into the pathway software and analyzed.
Human Entrez IDs of regulated genes were matched to rat Entrez IDs mainly based on the NCBI homologene database, supplemented with information provided by Ingenuity pathway software.
Over-representation analysis of differentially expressed genes was carried out using the Gene Ontology function within GeneSpring and Ingenuity pathway software.
Genes which are differentially associated with H2A.Z in LD611 cancer cells were functionally analyzed in the context of gene ontology and molecular networks by using Ingenuity pathway software (IPA; http://www.ingenuity.com).com
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The data obtained from the phosphorimager was analysed using Pathways software (Research Genetics).
The N-of-1 pathways software is available in R and Java at http://Lussierlab.org/publications/N-of-1-pathways Gene Sets Enrichment Analysis (GSEA).
NHS 111 employs staff who are mostly without clinical training, and the advice given is largely dependent on use of NHS Pathways software.
COPASI 4.4.29 (COmplex PAthway SImulator) software package was used for analysis [ 30].
The algorithm is available within the Pathway Tools Software Suite [23], which requires a license that is free of charge for academics.
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