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In this analysis, two short PGRPs were upregulated as expounded in serine protease cascade melanization pathway section.
As discussed further in the Inflammatory Response Pathway section, mmu-miR-29 appears to be a miRNA family displaying a protective role against fibrosis.
As far as NMDA receptor subunits, IPA shows a very intriguing upregulation of two specific subunits, GRIN1 and GRIN2c, and the functional implications of such changes are discussed in the pathway section.
The KEGG PATHWAY section is a collection of manually drawn pathway maps representing the information on the molecular interaction and reaction networks.
SuperPath information is available both in the GeneCards pathway section (Supplementary Figure S5A) and in PathCards (Supplementary Figure S5B) http://pathcards.genecards.org/, a GeneCards companion database presenting a web card for each SuperPath.
This discrepancy among RB family members indicates that RB possesses tumor suppressor functions that are not shared with p130 and p107 (Burkhart and Sage, 2008; Knudsen and Knudsen, 2008) (see 'RB pathway' section of the poster).
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Several of the motif gene sets associated to metastasis have been linked to certain pathways as discussed in the pathway sections.
The XML patching system works well where new conceptual features, such as pathway sections, are introduced and removed from a system.
To address linear pathway sections, constraints are imposed in accordance with the structure of the system when the parameter optimization is performed.
For analysis of the activity in the PI3K/Akt pathway, sections were co-stained with mouse anti-pan-Akt antibody (#2920; Cell Signaling Technology, Beverly, MA, USA) and rabbit anti-pAktser473 antibody (#4060; Cell Signaling Technology).
Two wood chips commodity price levels were considered (see Table 2) due to the alternative production pathways described in the "Wood chip production pathways" section.
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