Sentence examples for pathway query from inspiring English sources

The pathway query environment for our VFCP database is demonstrated at taiwanorchid_1 [ 63].

Considering a common pathway query from glucose, which completely resides in the giant carbon component in the graph constructed, a large fraction of the atom graph remains inaccessible.

Identifying disease molecular signatures from different pathological states not only captures the subtlety between disease subtypes and controls, but also provides disease gene hunting, related pathway query, genome wide association (GAWS) investigations, and following drug target identification [ 5– 7].

To assess the complexity of this pathway query, we stored also partial pathways in addition to those pathways with Z O = 1 and pathways which could not be extended any further because maximum search depth was encountered.

If a user submits genes that show similar knockout phenotypes to 'Find new members of a pathway' query submission page, search function first analyzes the connectivity among those genes using ROC analysis, which is summarized as area under the curve (AUC) score, and visualizes their network using Cytoscape Web software (30) installed on EcoliNet server.

Gene set enrichment analyses were performed using a combination of DAVID functional annotation (reported in Table 3), KEGG Pathway queries, Ingenuity Pathway Analysis.

Next we discuss the implemented built-in queries The fully implemented PathCase-SB queries are grouped into (1) Model queries (six queries); (2) Pathway queries (two queries); (3) Reaction queries (eight queries); (4) Species/molecule queries (four queries).

To this end, we performed a series of pathway queries to amino acids from their respective precursors.

Then, we are faced with assignment of metabolites as pool metabolites, which is a task that depends on the pathway queries we would like to ask.

Significance of changes in expression in pathways or networks is evaluated in the MetaCore™ suite based on the size of the overlap between user's dataset and a set of genes corresponding to a network or pathway queried.

For a majority of pathway queries, maximum search depth was set to 3 and number of pathways searched at depths 1, 2 and 3 to 50, 10 and 1, respectively.