Sentence examples for pathway package from inspiring English sources

We used the Amos 5.0 statistical pathway package to specify and test the SEM.

sigPathway is an independent GO pathway analysis package [47].

We used SigPathway [8], a genome-wide biological pathway analysis package, and discovered three major biologic alterations in early-stage ccRCC that are likely related to a loss of epithelial differentiation.

Partek Genome Suit 6.4 and Ingenuity Pathway Analysis package were used for identification of differentially expressed genes, hierarchical clustering, gene ontology, pathway analysis and establishing clinical significance.

Transfection of both ribonucleic acid reagents or plasmids mentioned above and the reporter plasmids in a Cignal Finder Pathway Reporter package (Qiagen, Hilden, Germany) was performed according to the manufacturer's instruction.

COPASI 4.4.29 (COmplex PAthway SImulator) software package was used for analysis [ 30].

The PlantCyc databases are closely tied with the Pathway Tools software package [ 38], a visualization and database system for pathways and biochemical reactions.

The diagrams are built using the Pathway Studio software package from Ariadne Genomics— http://www.ariadnegenomics.com/ and the diagram pages are built within a Content Management System CMSS).

To test this hypothesis, we carried out GO analysis of functional categories that are enriched in this commonly responsive gene set, using the Pathway Studio software package.

To determine whether downregulated responsive genes shared common cis-regulatory sequence motifs, we utilized the Pathway Studio software package to examine their promoter regions (2 kb up- or downstream of the transcriptional start sites) for known TF binding-site motifs.

The Pathways Tools package [ 62- 64] was used for reconstruction of metabolic pathways based on the genome annotation.