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We reconstructed the entire metabolic pathway of rubber biosynthesis in H. brasiliensis (in Additional file 2: Figure S2).
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We using the MapMan tool view annotated processes of interest or metabolic pathways by groups of rubber tree transcripts.
Compared with the transcriptome of latex and leaves, there existed different inner-cell metabolic pathways in the transcriptome of rubber tree bark.
The functional classification of KEGG provided a valuable resource for investigating specific processes, functions and pathways involved in bark transcriptome of rubber tree.
The production of the precursors of rubber biosynthesis through he MVA pathway and the MEP pathway is precisely regulated [ 56].
Carbon is directed through glycolysis (encoded by 52 genes), alternative pentose phosphate pathway (encoded by 14 genes), and acetyl CoA biosynthetic pathway (encoded by 120 genes) to produce intermediate substrates for the biosynthesis of rubber precursors.
It may be essential for prolonging duration of latex flow that up-regulated expression of unigenes HbACO mediating ethylene biosynthesis, HbAPX and HbSOD for antagonizing reactive oxygen species, but down-regulated expression of unigenes Hb4CL and HbCCR in the pathway of lignin biosynthesis and HbGluc for rubber particle aggregation.
The carbon assimilatory mechanism of rubber biosynthesis consists of 12 distinct sub-metabolic pathways, represented by 417 genes (in Additional file 1: Table S16).
To further analyze the transcriptome of rubber tree bark, all the unigenes were analyzed in KEGG pathway database.
Collector of rubber bands.
A lot of rubber".
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