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The first digit refers to the network category (metabolic pathway etc)., and the last four digits refer to the KEGG pathway number (if it existed in KEGG).
Pathway number 3, which has regulatory DC = 0.68 and co-membership DC = 0.005, is "Maturity onset diabetes of the young".
To reach one specific pathway in KEGG type in your web browser: " http://www.genome.jp/kegg-bin/show_pathway?ath0XXXX" being XXXX the pathway number.
The top 20 GO terms and KEGG pathways showing association with target genes were listed with GO terms, KEGG pathway, number of genes in the term, number of genes in the pathways, and P-value.
Pathway number 1, which has regulatory DC = 1.96 and co-membership DC = 0.12, is "Cell cycle" suggesting that the Cell cycle pathway does not tend to share genes, but to have regulatory relationship with other pathways.
The top 20 GO terms and KEGG pathways showing significant association with target genes were listed with GO terms, KEGG pathway, number of genes in the terms, number of genes in the pathways, and P-value (Tables S5 and S6).
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The result for different pathway numbers among these data sets is given in Figure 8.
Enzymes/Genes numbering 1 to 7 from the cytoplasmic pathway, numbers 8 to 9 from the mitochondrial pathway.
The last column shows A. thaliana KEGG pathway numbers where the metabolite is predicted to be involved; all KEGG pathway numbers are hyper-linked to the corresponding KEGG website.
Users can easily get the following statistics: number of genes, number of gene pairs, number of integrated pathways, number of original KEGG pathways, number of original WikiPathways pathways, number of original BioCyc(MouseCyc) pathways, and number of source databases.
The number of event pathways, number of possible staff combinations within each pathway and the number of distinct steps in each pathway prohibit displaying all the clinical and administrative labour associated with each pathway.
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