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We further show how pathway decomposition can be combined with weak bisimulation to handle a wider class that includes most currently known enzyme-free DNA implementation techniques.
We address these issues by formulating a new theory of pathway decomposition that provides an elegant formal basis for comparing chemical reaction network implementations, and we present an algorithm that computes this basis.
To overcome the problem of shared nodes, we propose a clustering step based both on topology and a metabolic pathway decomposition.
The first reason is that they do not follow textbook drawing conventions, and the second is that they emphasize topological clusters which generally do not correspond to a metabolic pathway decomposition.
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There are four kinds of reactions in TP: molecular evidence, pathway step, decomposition, and semantic [ 29].
They suggested that formation of the more stable nitrogen-centered radical rather than an oxygen-centered radical was the favored pathway for decomposition of the oxaziridine.
The proposed pathways for decomposition of HMX are similar to that of RDX presented earlier [37].
Detonation velocities can be predicted by assuming that aluminum powder, based on oxygen content and the different pathways of decomposition of explosives, partially interacts with detonation products.
Different pathways of decomposition such as, dissociation reactions, electron dissociative attachment, dissociative ionisation reactions, ionisation reactions and dissociative excitation reactions were included along with other pathways for different species produced and consumed with in plasmolysis.
Petri's net theory, among others [3], has been applied to modelling metabolic pathways [4], decomposition of large metabolic networks into smaller subnetworks [5] and topological analysis of metabolic networks [6].
FA is known to undergo two pathways of decomposition, to give either H2 or carbon monoxide (Scheme 1).
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