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Urbanczyk-Wochniak, E. & Sumner, L. W. Mediccyc: a biochemical pathway database for medicago truncatula.
The list of significant genes was used for pathway enrichment analysis based on KEGG human pathway database.
8886 (37.7%) unigenes were identified and mapped onto 254 pathways in the KEGG Pathway database.
The pathway database listings included in column-1 the RiceCyc, SorghumCyc, MaizeCyc and BrachyCyc.
In addition, 1471 reactions were classified into nine different subsystems based on KEGG pathway database.
The P-values were calculated by R package CLEAN using the KEGG pathway database.
Biological processes related to the signature genes (Consensus Pathway Database, release 31 (http://ConsensusPathDB.org)).
We also checked the Consensus Pathway database with the same genes (see Additional file 4: Table S1).
http://tanlab.ucdenver.edu/kMap/ Pathways Reactome Pathway database with visual representation for 21 organisms, which includes over 1500 human pathways.
The gene signatures of the MAPK, ERK, p38 and JNK pathway were from the BioCarta pathway and canonical pathway database.
Similar conclusions could be drawn from Biocarta pathway database queries.
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