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Bacterial pathogens were identified using conventional methods.
Bacterial pathogens were identified using standard techniques [ 13].
Pathogens were identified using direct fluorescent antibody testing or culture.
Pathogens were identified using Vitek-2 automated method and interpreted according to Clinical Laboratory Standards Institute Guidelines CLSII.
Suspected bacterial pathogens were identified using the Vitek 2 System (bioMerieux) and standard conventional methodologies as needed.
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Meanwhile pathogens in milk for each quarter were identified using cultures.
Pathogens present on near touch sites were identified using molecular techniques and the role of cleaning surfaces was assessed by determining the total number of colony forming unit directly before and after cleaning, 2, 4, and 6 hour later.
Genes potentially involved in host pathogen interactions were identified using local BLASTp (E value cutoff of e−) against the PHI-base curated database (www.phi-base.org, last accessed December 19 , 2014 Winnenberg et al. 2008).
Pathogens were identified manually or using the VITEK II system, and bacterial contaminants were excluded [ 19, 20].
Pathogens were identified in 46.3% of cases using mini-BAL and in 11.1% of cases using blood cultures (P <0.01).
Among the 54 patients, pathogens were identified in 25 patients (46.3%) using mini-BAL, and in 6 patients (11.1%) using blood cultures (P <.01).
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