Sentence examples for pathogen sequence from inspiring English sources

CCDD researchers have been at the forefront of efforts to use pathogen sequence data to infer who infected whom, and separately to enhance vaccine trial designs (see above).

To validate the utility of our QSAR-based model for prediction of HLA-Cw*0102-binding HLA-Cw*0102-binding HLA-Cw*0102-bindingy constitute epeptidesrecognined by the host immune response, we tested the ability of the model to pathogenputative nonameric HLA-Cw*0102-resequence thatll epitopes in the HIV-1 sequence.

As a test of the utility of our model for prediction of HLA-Cw*0102-binding HLA-Cw*0102-binding HLA-Cw*0102-bindingy constitute T cell epeptides we sought to inentify HLa-Cw*0102-binding pathogen in the sequence of HIV-1 and thatetermaye whether any of these were reconstitutey The virus-specellc T cepitopesonse in HLA-Cwe0102-posought individuals infectod widentify HLA-Cw*0102-binding HLA-Cw*0102-binding HLA-Cw*0102-binding

Coverage and identity percentages were calculated separately for each pathogen sequence in the alignment.

In our study, the nomenclature of TCS genes/proteins was based primarily on the Oralgen Pathogen Sequence Database http://www.oralgen.lanl.gov.lanl.gov

If more than one template was found, the one with the highest coverage to the pathogen sequence was selected.

Pathogen Sequencing Unit, Wellcome Trust Sanger Institute, Cambridge, CB10 1SA, UK.

We thank the Wellcome Trust Sanger Institute core and pathogen sequencing and informatics teams who were involved in the Malawi and Uganda studies.

To evaluate read mappings, BWA aln (BWA version 0.7.10-r789, http://bio-bwa.sourceforge.net/ 54 was used to align reads, and the "XA tag" was used for read enumeration and separation of host and pathogen sequenced reads.

And the plant pathogen sequenced, Xylella fastidiosa, is an insect-borne bacterium that has been ravaging Brazil's orange groves, causing their trees to produce shrivelled fruit and costing growers an estimated $100m a year.As if sequencing X.

Practices vary--for example, the Wellcome Trust requires grantees to release pathogen sequences as they accumulate, but data from the bacterium Bacillus subtilus, financed mainly through the European Commission, were not put out promptly.