Sentence examples for patch tools from inspiring English sources

Using the Genomatix and Patch tools, we identified several putative binding sites for NF- κB transcription factors in the Gsk3 β upstream promoter region.

Familiarity with Photoshop will probably help you understand Facetune — you'll already know what buttons like "Patch Tool" do, for example.

Photoshop has a couple of tools built just for this: the Patch tool and the Content Aware Move tool.

This one's not the greatest image, but good enough to demonstrate the Before, how to select, and the After when using the Patch tool.

Export this as SBML and import into the patch tool.

Using our Patch Tool to investigate this, we created two species knockout patches which knockout Rsk and PI3K, respectively.

Import this base system into the patch tool 2. Also using Copasi, build an extended model representing the base system along with an extra pathway.

We first created the Ras model by using our Patch Tool to select our core ERK patch (blue) along with the Ras (green), and SOS feedback (orange) patches and subsequently launched and simulated the model in Copasi.

To identify the occurrence and frequency of transcription factor binding sequences in the Gsk3 β promoter, Genomatix software (http://www.genomatix.de/matinspector.html) and Patch tool (http://www.gene-regulation.com/cgi-bin/pub/programs/patch/bin/patch.cgi) were used.

We then used our Patch Tool to create the Rap1 model by deselecting the Ras and SOS feedback patches and selecting the Rap1 patch instead, then re-launched Copasi with the new model whilst maintaining our original simulation and plot settings.

The close integration of our Patch Tool with the simulation tool Copasi is also extremely useful as once patches have been selected the model can be rapidly simulated and analysed, especially as both simulation and plot options are maintained as models are updated.