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The CTWC algorithm was able to identify numerous highly correlated gene subsets during the recursive partitioning of samples and genes.
After partitioning of samples against ethylacetate, borax/hydrochloric acid pH 8 buffer (Einecs, Fluka) was applied to the samples to facilitate pH adjustment.
Biologically, we expect the partitioning of samples into correlated and uncorrelated to depend mainly on whether or not the TF is active.
This partitioning of samples is important as it allows the generalisability of the model to be assessed, and hence guards against over-fitting.
Based on the partitioning of samples according to ancestry clusters revealed by STRUCTURE [ 23], a global F ST of 0.127 was obtained between molestus and pipiens forms.
In total, 5,388 transcripts passed the filtering process and were used for the cluster analysis, which showed a clear partitioning of samples based on their disease status, indicating a distinct difference in expression profile between the two sample groups.
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Since each linear separator results in a binary partition of samples, we apply our procedure iteratively to separate each group of samples into two new groups in such a way that the new linear separator is orthogonal to the previously determined ones.
The partition of samples generated by a set of multi-state probes X1,..., X n distinguishes the samples in gd(X i ), for all i, from the rest.
A significant partition of samples along both axes (x-axis F = 4.515, p < 0.01; y-axis F = 21.58 p < 0.0001) was evidenced.
Genetic assignment analysis based on resequencing of 18 loci in a sample of 25 to 45 wild barley individuals identified a primary geographic partition of samples into regions east and west of the Zagros Mountains (Morrell and Clegg 2007).
One more unbiased estimate should be based on the average of the results obtained by repeating the partition of samples between training and test set many times, which is time consuming for our methods.
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