Exact(3)
The genes and the morphological data matrix were combined and analysed simultaneously in a Bayesian framework using MrBayes ver. 3.0b4 [39] with partition specific model settings; a separate HKY85+Γ+I model was assigned to each of four partitions of the molecular data defined as; 12posCO1, 3posCO1, 12posH3/Wingless, 3posH3/Wingless.
The combined dataset was analysed using partition specific model parameters [ 73].
Although lipids themselves are a prerequisite for phase partition, specific protein recruitment also helps these domains to compartmentalise cell processes in the PM (Schroeder et al., 1994; Brown and London, 1997) and to regulate protein sorting to different cell destinations (Muñiz and Zurzolo, 2014).
Similar(57)
This analysis incorporated a complex partitioned model of nucleotide substitution that allowed 39 independent partition-specific models to be used to jointly estimate the phylogeny.
In these partitioned Bayesian phylogeny analyses, all model parameters were unlinked and partition-specific evolutionary rates were allowed to vary.
Each codon position per protein-coding gene was assigned its own partition and partition-specific models of evolution were determined using MrModeltest (http://people.scs.fsu.edu/nylander/) using AIC.
This combined nuclear and mitochondrial gene dataset was analyzed in MrBayes similar to the larger mitochondrial dataset above with partition-specific models for all codon positions of each protein-coding gene being allocated an independent model according to AIC criteria.
In our Bayesian analysis with NT data, partition-specific models are used.
We employed 4 Markov chains for 3 6 million generations and the partition-specific models described.
Next we bound the partition-specific acceptance probability A (T ) : A (g ^ T ) for this sampler.
Character profiles and partition-specific models selected are shown in Table 1.
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