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These subprocesses are related to the class gene expression through part of relations.
The edges in the GO-hierarchy represent "is a" and "part of" relations.
These subprocesses are associated to the class DNA microarray experimental process through part of relations, since they only occur as part of a DNA microarray experimental process.
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Because the evaluation focuses on photosynthesis, rather than cell anatomy, the part-of relations between entities (e.g., a chloroplast is a part of a plant cell) were removed.
Relations other than hyponymy that have been targeted, of relevance to language understanding, include part-of relations, causal relations, and telic relations (such as that the use of milk is to drink it).
The entity relations (REL) task, a supporting task of the BioNLP shared task 2011 [30], deals with the extraction of two types of part-of relations between a gene or protein and an associated entity.
"Part-of" relations are frequently defined between organs and anatomic systems, e.g. bronchial tubes are part of the respiratory system.
Successful vocabularies in the life sciences range from formal ontologies defined in description logics such as SNOMED CT via directed acyclic graphs representing is-a and part-of relations such as the Gene Ontology (GO) (Ashburner et al., 2000) to hierarchical terminologies which define narrower and broader terms such as MeSH [ www.nlm.nih.gov/mesh].
Thus, the referring expression generator used only one relation, namely the "part-of" relation.
Let us first sharpen our understanding of the part-of relation.
The principles for the (proper) part-of relation imply that complexes with the same parts are identical.
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