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Appropriate PERL scripts were written in order to pipeline the process of running tools in sequence, parsing result files and loading the results into the database.
The parsing result is a collection of RDF triples.
If the parsing result is always correct, the rule should extract correct PPIs all the time.
They typically parse a sentence containing a protein pair and extract some lexical and syntactic features from the parsing result.
We use a switch statement to determine what to parse and store the parsing result to EEPROM on our chip.
Figure 1 shows a parsing result for the sentence ' IL-8 recognizes and activates CXCR1', in the dependency tree format used in the 2006 and 2007 CoNLL shared tasks on dependency parsing (which we call the 'CoNLL' format).
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Parsing results of partial sentences can be decomposed into derivation rules, which turn out to be salient features for dialogue act detection.
PG participated in designing UNIX awk and grep scripts for parsing results of the clusters of orthologous genes.
In-house developed Perl scripts were used to parse results of MISA and IMEx along with additional information from Genbank and fasta formatted files.
A file containing 259,162 phenotypic descriptions with assigned Drosophila genes was collapsed and parsed resulting in a non-redundant gene set file of 11,999 unique phenotypic terms with annotated genes.
For fragment extraction we parsed results of GIGOgene [ 23] spliced alignment of human RefSeq against the phase III human DNA database from NCBI, picking only canonical SSs from predicted multiexonic structures.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com