Sentence examples for parsing output from inspiring English sources

A combination of BLAST searches with closely related genomes, Perl scripts for parsing output, and hand editing was used to define the protein and RNA genes in the unannotated genomes of Pisum sativum, Vitis vinifera, and Medicago truncatula.

One resource called 'Evidence', however, parses output files and collates relevant protein characteristics (referred henceforth as an evidence profile).

Finally, a random selection of records were manually checked against parsed outputs.

Parsing the output generated by this tool suffices to extract the SWF logical structure.

Memory consumption was measured by parsing the output of the Unix command 'top' every second.

Dotplots were generated using MUMmer plot and further visualized by parsing NUCmer output with custom Perl scripts.

These stringency criteria for parsing BLAST output are default parameters, but users have the option to specify alternative criteria.

The distribution of Bayesian posterior probabilities for each clade was obtained by parsing MrBayes'trprob output files produced independently for each gene.

By parsing its output files, Snazer imports two relevant pieces of information inherently bound to the modeled systems: the graphs of the simulated reactions and the simulated traces.

For example, BioPerl (http://www.bioperl.org) and Biopython (http://biopython.org/) are widely adopted for the tasks of parsing BLAST output and querying the GENBANK database (2, 3).

These needs led to the inclusion in community-developed libraries such as BioPerl [ 2], Biopython [ 3], BioJava [ 4] and BioRuby [ 5] of code for calling BLAST and parsing its output.