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Further network parsing, matrix construction, and dendrogram parsing was done using C /.NET 4.0 on a Windows 7 machine.
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Both these components are described below: Figure 4 Parser and TDF matrix builder.
The 47,621 resulting SNP positions were parsed into a matrix containing the allele carried by each strain.
The output was parsed to a matrix containing the number of CDS assigned to each ortholog group for each strain.
This matrix was parsed for community-wise boundary-node detection.
The architecture employs the parser to parse data and TDF matrix builder to build the TDF matrix (described in Section 3).
Data corresponding to the 60-cm-diameter cylinder were parsed into a 2D matrix of 2 cm × 2 cm pixels.
Cd-hit clusters were parsed into an absence-presence matrix from which the core, pan and variable genomes were parsed using custom scripts.
However, we can test whether the product of several most likely minimal polynomials is a factor of the generator polynomial to increase the successful recognition rate, because according to the adaptive processing of the parity-check matrices, the more parity equations we consider, the more we are able to construct a parity matrix which is parsed on less reliable bits.
The pairwise similarities generated by this analysis were parsed and stored in a matrix that served as input for clustering by the TribeMCL approach [ 86].
Text-style VJ recombination matrix files were processed with parse-table and make-conf commands to generate Circos input files.
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