Furthermore, the efficiency of dependency parsing compares favorably to phrase structure parsing or deep parsing.
The speed of processing is thus optimized by ensuring that each unique retrieved InChI is parsed and compared to the Query InChI only once.
After the output files were parsed and compared with the original PlantBlast searches, a preliminary total of 41 kinesins were identified.
We also made use of MetRxn, a knowledgebase that includes standardized metabolite and reaction descriptions drawn from multiple databases and genome-scale models [ 52], to parse and compare the contents of these models.
The Conservatrix algorithm was employed to parse and compare 9-mers and 10-mers (class I analysis only) for highly conserved segments among the four human H7N9 influenza sequences, organized by protein of origin: HA, M1, M2, NA, NEP, NP, NS1, PA, PB1, PB1-F2, or PB2.
In our BLASTx analyses vs. the SwissProt database parsing the results as hits with bitscore ≥40 yielded less than 1% fewer strong matches as compared to parsing the result set with the E-value cutoff of 10−5 (Table 6).
HMMER and BLAST hits were compared and parsed by manual editing as well as using small PERL scripts.
To distinguish empirically between parallel and serial parsing models, we compare ERP responses to garden-path sentences with ERP responses to truly ungrammatical sentences.
After barcode parsing, each barcoded sample was compared over input DNA signal.
After parsing the resulting pyrofragments, we compared them to the newly completed rhesus genome to identify candidate SNPs.
