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The rule-based operation strategies introduce different operation parameters to run the system operation.
The logical stage purpose is to collect and prepare the input parameters, to run the DPM module.
The approach requires a minimal number of parameters to run the model and is suitable for modelling on regional scale.
The following subsections are organized as follows: the "Workload and operating parameters for the evaluation of the proxy" subsection describes the workload and operating parameters to run the simulations.
This connector allows the domain scientists to choose the target platform and then manages it automatically; it accepts all the necessary parameters to run many instances of their program regardless of whether this runs on a peak supercomputer, a commercial cloud like Amazon EC2 or (in Australia) the national federated university cloud system NeCTAR.
We have used default parameters to run all of them.
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We set DeepDive's parallelization parameter to run 48 processes with a maximum of 64 GB of memory.
In addition, the algorithm has a free parameter to choose the number of predicted SNPs to call and a time limit parameter to run.
The parameters used to run Local Modeling are the default parameters mentioned in Scholtens et al. (2005).
The parameters selected to run Trinity were all default parameters (kmer length = 25-mers) except min_kmer_cov which was set to 2. In order to assess the quality of the assembly, the Alignment Visualization and Quality Assessment application within Trinity software was used.
It does not contain any executables, default input files and parameters needed to run the workflow.
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