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This is more suggestive of parallel gains.
But seven parallel gains in this single species raise questions.
We also found evidence for parallel gains and for intron sliding.
This suggests either repeated parallel gains, or retention of ancestral positions.
Parallel gains are possible: other Deuterostomes share about one Amy intron position with Protostomes.
This underestimation is expected when either multiple gains and losses occur on an individual branch, or parallel gains or losses occur on multiple branches [25].
Similar(9)
The parallel gain obtainable is predicted with strong accuracy, providing a quantitative understanding of the potential impact of this method.
Regarding Deuterostomes, at most one intron position is shared exclusively by them (and it may be a parallel gain).
To count the number of gained introns, we used two categories: single and parallel gain events.
Nevertheless, an overall parallel gain of ~10% has been computed also for the smaller data set.
These paired cell lines were therefore used for all parallel gain- and loss-of-function studies.
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