Sentence examples for pan analysis from inspiring English sources

We also analysed genetic variation at six microsatellite loci assumed to be neutral using a subset of those individuals from the Pan analysis: Gmo2 (Brooker et al. 1994), Gmo8, Gmo19 (Miller et al. 2000), Tch5, Tch14 and Tch 22 (O'Reilly et al. 2000).

The analyses included 30 strains comprising seven different Fusobacterium spp. The genes and proteins sequences for all these strains were downloaded from FusoBase and used as the input for the pan-genome analysis using PGAP (Pan-Genomes Analysis Pipeline) version 1.1 (61.1

PGAP (pan genome analysis pipeline) was used to cluster protein sequences of these three species in their respective orthologous groups [ 83].

We investigated the accessory elements of the whole ST93 S. aureus population using a pan genome analysis of all isolates in this study (fig. 4).

Among pan-genome analysis tools, PGAP, a comprehensive pan-genome analysis pipeline with five modules, could only deal with small-scale genomes in the pan-genome profile analysis module, while PanGP was a highly efficient tool for large-scale bacterial pan-genome profile analysis with sampling algorithms.

One clear limitation of pan-genome analysis is the difficulty of assessing whether a pan-genome is really closed or not, given the dynamic nature of a given bacterial population and its associated tendency to evolve and exchange genetic material.

Pan-genome and orthologous cluster analyses were performed with pan-genome analysis pipeline [ 28]. A. longa SW024T was cultured in MB for one day, and then observed with a transmission electron microscope TEM-1200EXX, JEOL, Tokyo, Japan).

Pan-Genomes Analysis Pipeline (PGAP) is a perl-script pipeline that consists of orthologous gene clustering, pan-genome analysis, SNP in CDS calling, evolutionary analysis and COG distribution.

Perhaps the most direct evidence comes from the recent TCGA Pan-Cancer analysis.

This study provides a first pan-European analysis that delineates the spatial patterns of forest cover changes in 36 countries.

The performed comprehensive pan-cancer analysis was complemented by a plethora of studies focusing on individual cancer types.